PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G22650.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family E2F/DP
Protein Properties Length: 261aa    MW: 29215.5 Da    PI: 10.4475
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G22650.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP70.22.4e-2264140371
          E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse...........dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      +++Lr +++    + +k+e+ g++t+neva+e+ +e           d+kn+rRR+YD++NVL a+++i+k +k+ei+w+g
  LPERR01G22650.2  64 GWGLREFSKI---VSKKVEAkGRTTYNEVADEIFAElksislnglefDEKNIRRRVYDAFNVLIAIRVIAK-DKKEIKWMG 140
                      689*******...99999999**************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.7E-3560145IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.7E-2362140IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023196.3E-1865140IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467856.94E-1765141IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144585.06E-27145244IPR014889Transcription factor DP, C-terminal
SMARTSM011381.5E-25147254IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440748.37E-30148251No hitNo description
PfamPF087814.7E-23149247IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MAPPCGDAAA AASAAPGLAN LLIRGTAGLP PLPPRSGGNT AGREEGGANR NGKKEKSGAQ  60
RITGWGLREF SKIVSKKVEA KGRTTYNEVA DEIFAELKSI SLNGLEFDEK NIRRRVYDAF  120
NVLIAIRVIA KDKKEIKWMG LTNYRYERIH KLEEVHKELI TRIKNKKKLL QEIEKQFDDL  180
QNITSRNQAR QRPAESANGV CLPFLLIKTS RQARVEIEIS KDSKFARFDF NGTPFTMHDD  240
VSILEDIRRN NIGRSSLSIL P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-2364141989PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2245290.0AY224529.1 Oryza sativa (japonica cultivar-group) isolate 21044 DP protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631692.11e-160PREDICTED: transcription factor-like protein DPB isoform X2
TrEMBLA0A0D9V4450.0A0A0D9V445_9ORYZ; Uncharacterized protein
STRINGORGLA01G0217000.11e-155(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.14e-56Transcription factor DP